Suggestive GxE (P < 5e-6)
chr4_11944206_A_G
Allele freq

Stratified OR
|
|
G param by E
|
|
|
AA
|
AG
|
GG
|
AG
|
GG
|
|
procmeatqcm_v2=0
|
1
|
1.08 (1.03-1.14)
|
1.16 (1.07-1.25)
|
1.08 (1.03-1.14)
|
1.16 (1.07-1.25)
|
|
p0
|
P= 1
|
P= 0.0028
|
P= 0.00014
|
P= 0.0028
|
P= 0.00014
|
|
procmeatqcm_v2=1
|
1.57 (1.42-1.73)
|
1.42 (1.3-1.54)
|
1.22 (1.08-1.38)
|
0.9 (0.83-0.98)
|
0.78 (0.69-0.88)
|
|
p1
|
P= 1.2e-19
|
P= 6.5e-16
|
P= 0.0012
|
P= 0.019
|
P= 6.4e-05
|
|
E param by G
|
|
procmeatqcm_v2
|
1.57 (1.42-1.73)
|
1.31 (1.2-1.43)
|
1.06 (0.91-1.23)
|
|
|
|
p
|
P= 1.2e-19
|
P= 6.1e-09
|
P= 0.46
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr15_92814380_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
0.89 (0.77-1.02)
|
0.55 (0.2-1.47)
|
0.89 (0.77-1.02)
|
0.55 (0.2-1.47)
|
|
p0
|
P= 1
|
P= 0.083
|
P= 0.23
|
P= 0.083
|
P= 0.23
|
|
procmeatqcm_v2=1
|
1.33 (1.24-1.43)
|
2.86 (2.12-3.85)
|
4.3 (0.17-106.6)
|
2.14 (1.59-2.88)
|
3.22 (0.13-79.92)
|
|
p1
|
P= 4.8e-15
|
P= 4.8e-12
|
P= 0.37
|
P= 5e-07
|
P= 0.48
|
|
E param by G
|
|
procmeatqcm_v2
|
1.33 (1.24-1.43)
|
3.22 (2.22-4.66)
|
7.85 (0.17-358.94)
|
|
|
|
p
|
P= 4.8e-15
|
P= 5.9e-10
|
P= 0.29
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr8_59807881_A_C
Allele freq

Stratified OR
|
|
G param by E
|
|
|
AA
|
AC
|
CC
|
AC
|
CC
|
|
procmeatqcm_v2=0
|
1
|
1.11 (0.98-1.25)
|
0.8 (0.28-2.27)
|
1.11 (0.98-1.25)
|
0.8 (0.28-2.27)
|
|
p0
|
P= 1
|
P= 0.094
|
P= 0.68
|
P= 0.094
|
P= 0.68
|
|
procmeatqcm_v2=1
|
1.4 (1.3-1.51)
|
0.82 (0.67-1.01)
|
0.21 (0.02-2.05)
|
0.59 (0.48-0.72)
|
0.15 (0.02-1.46)
|
|
p1
|
P= 9.2e-20
|
P= 0.058
|
P= 0.18
|
P= 1.5e-07
|
P= 0.1
|
|
E param by G
|
|
procmeatqcm_v2
|
1.4 (1.3-1.51)
|
0.74 (0.57-0.97)
|
0.27 (0.01-4.88)
|
|
|
|
p
|
P= 9.2e-20
|
P= 0.026
|
P= 0.37
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr1_21015685_G_A
Allele freq

Stratified OR
|
|
G param by E
|
|
|
GG
|
GA
|
AA
|
GA
|
AA
|
|
procmeatqcm_v2=0
|
1
|
1.06 (1-1.12)
|
1.23 (1.06-1.43)
|
1.06 (1-1.12)
|
1.23 (1.06-1.43)
|
|
p0
|
P= 1
|
P= 0.04
|
P= 0.0067
|
P= 0.04
|
P= 0.0067
|
|
procmeatqcm_v2=1
|
1.48 (1.36-1.6)
|
1.27 (1.16-1.4)
|
0.98 (0.76-1.25)
|
0.86 (0.79-0.94)
|
0.66 (0.52-0.84)
|
|
p1
|
P= 4.1e-21
|
P= 5.1e-07
|
P= 0.84
|
P= 0.0014
|
P= 0.00081
|
|
E param by G
|
|
procmeatqcm_v2
|
1.48 (1.36-1.6)
|
1.2 (1.07-1.34)
|
0.79 (0.57-1.1)
|
|
|
|
p
|
P= 4.1e-21
|
P= 0.0016
|
P= 0.16
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr14_24188606_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
1.15 (1.08-1.23)
|
1.07 (0.83-1.37)
|
1.15 (1.08-1.23)
|
1.07 (0.83-1.37)
|
|
p0
|
P= 1
|
P= 1.5e-05
|
P= 0.61
|
P= 1.5e-05
|
P= 0.61
|
|
procmeatqcm_v2=1
|
1.46 (1.35-1.57)
|
1.19 (1.07-1.32)
|
1.27 (0.87-1.87)
|
0.81 (0.74-0.9)
|
0.87 (0.6-1.28)
|
|
p1
|
P= 4.1e-22
|
P= 0.0017
|
P= 0.22
|
P= 6.9e-05
|
P= 0.49
|
|
E param by G
|
|
procmeatqcm_v2
|
1.46 (1.35-1.57)
|
1.03 (0.9-1.18)
|
1.19 (0.71-2)
|
|
|
|
p
|
P= 4.1e-22
|
P= 0.66
|
P= 0.51
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr7_100511033_A_G
Allele freq

Stratified OR
|
|
G param by E
|
|
|
AA
|
AG
|
GG
|
AG
|
GG
|
|
procmeatqcm_v2=0
|
1
|
1.22 (1.07-1.39)
|
5.98 (1.24-28.92)
|
1.22 (1.07-1.39)
|
5.98 (1.24-28.92)
|
|
p0
|
P= 1
|
P= 0.0037
|
P= 0.026
|
P= 0.0037
|
P= 0.026
|
|
procmeatqcm_v2=1
|
1.4 (1.3-1.51)
|
0.91 (0.73-1.13)
|
0.13 (0.01-1.72)
|
0.65 (0.52-0.81)
|
0.09 (0.01-1.23)
|
|
p1
|
P= 1e-19
|
P= 0.39
|
P= 0.12
|
P= 9.8e-05
|
P= 0.071
|
|
E param by G
|
|
procmeatqcm_v2
|
1.4 (1.3-1.51)
|
0.75 (0.56-1)
|
0.02 (0-0.71)
|
|
|
|
p
|
P= 1e-19
|
P= 0.047
|
P= 0.031
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr16_23076410_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
1.12 (1.07-1.18)
|
1.09 (0.99-1.19)
|
1.12 (1.07-1.18)
|
1.09 (0.99-1.19)
|
|
p0
|
P= 1
|
P= 4.6e-06
|
P= 0.08
|
P= 4.6e-06
|
P= 0.08
|
|
procmeatqcm_v2=1
|
1.56 (1.43-1.7)
|
1.31 (1.21-1.43)
|
1.35 (1.16-1.56)
|
0.84 (0.78-0.91)
|
0.86 (0.75-1)
|
|
p1
|
P= 1.5e-23
|
P= 3.5e-10
|
P= 6.6e-05
|
P= 2.3e-05
|
P= 0.046
|
|
E param by G
|
|
procmeatqcm_v2
|
1.56 (1.43-1.7)
|
1.17 (1.06-1.28)
|
1.24 (1.03-1.5)
|
|
|
|
p
|
P= 1.5e-23
|
P= 0.0013
|
P= 0.025
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr9_114385930_A_G
Allele freq

Stratified OR
|
|
G param by E
|
|
|
AA
|
AG
|
GG
|
AG
|
GG
|
|
procmeatqcm_v2=0
|
1
|
0.96 (0.91-1.01)
|
0.95 (0.88-1.03)
|
0.96 (0.91-1.01)
|
0.95 (0.88-1.03)
|
|
p0
|
P= 1
|
P= 0.12
|
P= 0.19
|
P= 0.12
|
P= 0.19
|
|
procmeatqcm_v2=1
|
1.21 (1.11-1.32)
|
1.4 (1.29-1.53)
|
1.64 (1.44-1.87)
|
1.16 (1.07-1.26)
|
1.36 (1.19-1.55)
|
|
p1
|
P= 3.8e-05
|
P= 4.8e-15
|
P= 1.3e-13
|
P= 0.00039
|
P= 3.2e-06
|
|
E param by G
|
|
procmeatqcm_v2
|
1.21 (1.11-1.32)
|
1.46 (1.33-1.6)
|
1.73 (1.47-2.04)
|
|
|
|
p
|
P= 3.8e-05
|
P= 1.3e-15
|
P= 3.9e-11
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr18_21029284_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
0.82 (0.72-0.94)
|
0.63 (0.17-2.37)
|
0.82 (0.72-0.94)
|
0.63 (0.17-2.37)
|
|
p0
|
P= 1
|
P= 0.0037
|
P= 0.49
|
P= 0.0037
|
P= 0.49
|
|
procmeatqcm_v2=1
|
1.33 (1.24-1.43)
|
2.17 (1.72-2.76)
|
9.04 (0.35-230.21)
|
1.63 (1.29-2.07)
|
6.79 (0.27-172.91)
|
|
p1
|
P= 9.3e-15
|
P= 1.3e-10
|
P= 0.18
|
P= 4.2e-05
|
P= 0.25
|
|
E param by G
|
|
procmeatqcm_v2
|
1.33 (1.24-1.43)
|
2.65 (1.95-3.6)
|
14.38 (0.26-809.18)
|
|
|
|
p
|
P= 9.3e-15
|
P= 4.3e-10
|
P= 0.19
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr5_71909347_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
1.15 (1.07-1.24)
|
1.69 (1.21-2.38)
|
1.15 (1.07-1.24)
|
1.69 (1.21-2.38)
|
|
p0
|
P= 1
|
P= 0.00016
|
P= 0.0022
|
P= 0.00016
|
P= 0.0022
|
|
procmeatqcm_v2=1
|
1.44 (1.33-1.55)
|
1.24 (1.09-1.4)
|
0.62 (0.33-1.15)
|
0.86 (0.76-0.97)
|
0.43 (0.23-0.8)
|
|
p1
|
P= 7.4e-21
|
P= 0.00077
|
P= 0.13
|
P= 0.016
|
P= 0.0075
|
|
E param by G
|
|
procmeatqcm_v2
|
1.44 (1.33-1.55)
|
1.07 (0.92-1.25)
|
0.37 (0.16-0.83)
|
|
|
|
p
|
P= 7.4e-21
|
P= 0.38
|
P= 0.016
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr15_98258859_C_T
Allele freq

Stratified OR
|
|
G param by E
|
|
|
CC
|
CT
|
TT
|
CT
|
TT
|
|
procmeatqcm_v2=0
|
1
|
0.83 (0.75-0.92)
|
0.91 (0.43-1.9)
|
0.83 (0.75-0.92)
|
0.91 (0.43-1.9)
|
|
p0
|
P= 1
|
P= 0.00022
|
P= 0.8
|
P= 0.00022
|
P= 0.8
|
|
procmeatqcm_v2=1
|
1.32 (1.23-1.42)
|
1.87 (1.57-2.23)
|
1.48 (0.27-8.23)
|
1.41 (1.19-1.68)
|
1.12 (0.2-6.21)
|
|
p1
|
P= 4.2e-14
|
P= 4.8e-12
|
P= 0.65
|
P= 9.6e-05
|
P= 0.9
|
|
E param by G
|
|
procmeatqcm_v2
|
1.32 (1.23-1.42)
|
2.25 (1.8-2.83)
|
1.63 (0.18-14.73)
|
|
|
|
p
|
P= 4.2e-14
|
P= 1.9e-12
|
P= 0.66
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr2_43003484_A_C
Allele freq

Stratified OR
|
|
G param by E
|
|
|
AA
|
AC
|
CC
|
AC
|
CC
|
|
procmeatqcm_v2=0
|
1
|
1.11 (1.02-1.2)
|
1.17 (0.74-1.84)
|
1.11 (1.02-1.2)
|
1.17 (0.74-1.84)
|
|
p0
|
P= 1
|
P= 0.012
|
P= 0.51
|
P= 0.012
|
P= 0.51
|
|
procmeatqcm_v2=1
|
1.42 (1.32-1.53)
|
1.07 (0.94-1.22)
|
0.93 (0.5-1.7)
|
0.76 (0.67-0.86)
|
0.65 (0.36-1.2)
|
|
p1
|
P= 1.4e-20
|
P= 0.31
|
P= 0.8
|
P= 1.4e-05
|
P= 0.17
|
|
E param by G
|
|
procmeatqcm_v2
|
1.42 (1.32-1.53)
|
0.97 (0.82-1.15)
|
0.79 (0.34-1.87)
|
|
|
|
p
|
P= 1.4e-20
|
P= 0.71
|
P= 0.59
|
|
|
Interaction Plot

Locuszoom

Func Annot

chr13_21949790_T_A
Allele freq

Stratified OR
|
|
G param by E
|
|
|
TT
|
TA
|
AA
|
TA
|
AA
|
|
procmeatqcm_v2=0
|
1
|
0.86 (0.76-0.96)
|
0.64 (0.3-1.4)
|
0.86 (0.76-0.96)
|
0.64 (0.3-1.4)
|
|
p0
|
P= 1
|
P= 0.01
|
P= 0.27
|
P= 0.01
|
P= 0.27
|
|
procmeatqcm_v2=1
|
1.33 (1.23-1.43)
|
2.15 (1.73-2.69)
|
0.3 (0.01-8.35)
|
1.63 (1.3-2.03)
|
0.23 (0.01-6.3)
|
|
p1
|
P= 2.9e-14
|
P= 1.2e-11
|
P= 0.48
|
P= 1.7e-05
|
P= 0.38
|
|
E param by G
|
|
procmeatqcm_v2
|
1.33 (1.23-1.43)
|
2.52 (1.9-3.34)
|
0.47 (0.01-20.18)
|
|
|
|
p
|
P= 2.9e-14
|
P= 1.4e-10
|
P= 0.69
|
|
|
Interaction Plot

Locuszoom

Func Annot
